Plant MITE

SE2510713

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1943
Brachypodium distachyon
SE2510713
Tc1/Mariner
St52
Bd2:54639532-54639889
TA
TACTCCCTCCGTCCAGTTTTACTAGCCGTTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

              AG       A C         TTCT      GTACCA   AAGTCCTGAGCGTTGTACTTTTGGACAAAATGCCCCGAGTGCATGGCCCAGCCTGCACTCGATTCACGAGCATTTTTATTTTGTTGCCCAATTAGATGAGACCAAGACTGCCGGCCGCTGACGCGCTCCC
TACTCCCTCCGTCC  TTTTACT G CGTTTTAGT    GCGCTC      AGG                                                                                                                                  
||||||||||||||  ||||||| | |||||||||    ||||||      |||                                                                                                                                   
ATGAGGGAGGCAGG  AAAATGA C GCGGAATCA    ACTTGT      CGG                                                                                                                                  
              CA       C T         ----      ------   ATCAGGTACATATGGTCGGCGGGACCAGGAAAATCGAGATTTATGGCTGCAACGGGGATAAGAGTCAGGGTGCCAACTAAACGTACGGTGCCTGCCGGCTTACTTGTCGCATGCGCTCCACACCCTGCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510713

TACTCCCTCCGTCCAGTTTTACTAGCCGTTTTAGTTTCTGCGCTCGTACCAAGGAAGTCCTGAGCGTTGTACTTTTGGACAAAATGCCCCGAGTGCATGGCCCAGCCTGCACTCGATTCACGAGCATTTTTATTTTGTTGCCCAATTAGATGAGACCAAGACTGCCGGCCGCTGACGCGCTCCCCACGTCCCACACCTCGCGTACGCTGTTCATTCGGCCGTCCGTGGCATGCAAATCAACCGTGGGACTGAGAATAGGGGCAACGTCGGTATTTAGAGCTAAAAGGACCAGGGCGGCTGGTATACATGGACTAGGCTGTTCAACTAAGGCGTCCAGTAAAAACGGACGGAGGGAGTA

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