Plant MITE

SE2550714

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1944
Brachypodium distachyon
SE2550714
PIF/harbinger
To37
Bd1:33237555-33237793
TAA
AGGGTGTGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TA   G         TTTTA  -C    --     A       ---     -  --- C        ATTTTGGTCATGGTTTTGGCTGCCCAAGAGTTGGCCGACATTGACAGGAAAAATAACAA
  AGG TGTGTTTGG     GC  CGAG  TTTAC GTACCGA   AACCT TG   G TAGCCAAA                                                           
  ||| |||||||||     ||  ||||  ||||| |||||||   ||||| ||   | ||||||||                                                            
  TCC ACACAAACC     CG  GCTT  GGATG TATGGTT   AAACC GT   G GTTTTTTC                                                           
AA   A         --TAA  CC    TT     G       AAC     A  ACT -        AAACAGAAACAAACCCAACAACGGTTTTAAAACCGTTCGGTTACGGAGAGACGGTTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550714

TAAGGGTGTGTTTGGTTTTAGCCCGAGTTTACAGTACCGAAACCTTGGCTAGCCAAAATTTTGGTCATGGTTTTGGCTGCCCAAGAGTTGGCCGACATTGACAGGAAAAATAACAAGATTTGGCAGAGAGGCATTGGCTTGCCAAAATTTTGGCAACAACCCAAACAAAGACAAACTTTTTTGGTCATGACCAAACAATTGGTATGGTAGGTTTTCGCCGCAATCCAAACACAACCTAA

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