Plant MITE

SE2530717

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1947
Brachypodium distachyon
SE2530717
hAT
Hat36
Bd4:3246748-3246907
CTAGCTAC
TAGCTACTAGGGTTGCAAGTGGGAGCCCACTTAAGTCCCACTTCTAGTGCA

Secondary structure and sequence

TSD TIR

5'

3'

C      C                       T      C          G  ATCTTTCAA        -C        A
 TAGCTA TAGGGTTGCAAGTGGGAGCCCAC TAAGTC CACTTCTAGT CA         TTTTAGTT  GAATTTTG 
 |||||| ||||||||||||||||||||||| |||||| |||||||||| ||         ||||||||  |||||||| G
 ATCGAT ATCCCAACGTTCACCCTCGGGTG ATTCAG GTGAAGATCA GT         AAGATCAA  TTTAGAAC 
C      C                       T      C          A  AAACCCTAA        AT        T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530717

CTAGCTACTAGGGTTGCAAGTGGGAGCCCACTTAAGTCCCACTTCTAGTGCAATCTTTCAATTTTAGTTCGAATTTTGAGTCAAGATTTTAAACTAGAAAATCCCAAATGAACTAGAAGTGCGACTTATGTGGGCTCCCACTTGCAACCCTACTAGCTAC

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