Plant MITE

SE2550731

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1961
Brachypodium distachyon
SE2550731
PIF/harbinger
To45
Bd2:27123063-27123601
TAT
GGGTGAAAATGGTTAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

TAT        A   TTA    AATTACC   C AATCCGTTTCCGAATCCGAATTTTTAGGATATGGGAAGAGAAATTATTATCCGACCGGATATGGCATAGGATATGGTACGAGCATTATCCGGCGGATACCAGATTATCCGAAATTACAATCGGATAATCCGACCCTAATAAGTCGGATATTATCCGTTTTTACCAACATGTTATATGCAACCCACTAGTCCAGGCTGCCCATCCCAAGAAAGCCCTTATCAACATATATCCCAACCTA
   GGGTGAAA TGG   GGAT       GTC G                                                                                                                                                                                                                                              
   |||||||| |||   ||||       ||| |                                                                                                                                                                                                                                              C
   CCCACTTT GCC   CCTA       CCT G                                                                                                                                                                                                                                              
ATT        G   TAG    -----AG   - CCTATTAGGAGCATGGCATAGGATAAGGTATAAAAAATAGCCTAAGCCTTTGCCACGCCTATACCTAAGCCTGTGCTTTTGCCTTTGCCATGCCATCGCCTTGCTACGGCCTAGTCTTTGCCTATTACTACTTGCCTATCACGCACGTATCATCATTATTGTTTTTTCAAGTATCGGTAGTAAATATAACCCGGATCTGGGGTTTGGCGCCGATTATAGTGCTCTTTTGTGTCATCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550731

TATGGGTGAAAATGGTTAGGATAATTACCGTCCGAATCCGTTTCCGAATCCGAATTTTTAGGATATGGGAAGAGAAATTATTATCCGACCGGATATGGCATAGGATATGGTACGAGCATTATCCGGCGGATACCAGATTATCCGAAATTACAATCGGATAATCCGACCCTAATAAGTCGGATATTATCCGTTTTTACCAACATGTTATATGCAACCCACTAGTCCAGGCTGCCCATCCCAAGAAAGCCCTTATCAACATATATCCCAACCTACTTCTACTGTGTTTTCTCGTGATATTAGCCGCGGTTTGGGGTCTAGGCCCAATATAAATGATGGCTATGAACTTTTTTGTTATTACTACTATGCACGCACTATCCGTTCATCATTATCCGTTTCTGATCCGGCATCGTTCCGCTACCGTACCGTTTCCGTTTTCGTGTCCGAATCCATATCCGCACCGTTTCCGAATCCGATAAAAAATATGGAATAGGATACGGTACGAGGATTATCCGTCCGAATCCGATCCGGTTTCACCCTTA

Copy Cancel