SE2520732

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1962
  • Brachypodium distachyon
  • SE2520732
  • Mutator
  • M9
  • Bd2:18487248-18487762
  • TGTCGAAAG
  • TCGAAAGGGGAAATTTGCTGGAGGACACCGTTATTTTGTGGCTTTTGCTGAAACACACCGCCGGAACATGTCTTTGCCCAGTACCATTACAATTTTGTGAACATTTGCTAGAACACACTGCATCGACTAAAATTGAGAATTTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
TG    -           T     A                         C                  CA        C                      A       C         C  C  C A       T A   -      -------AT     T   GACTACCATCGTAAATCCAATTTTGAAAACTTTTTTCCTTTGTACAAATCGATTTTTGACATCTACTAGGGTCCGTCGTTGGTCGATGTGGGCATT
  TCGA AAGGGGAAATT GCTGG GGACACCGTTATTTTGTGGCTTTTG TGAAACACACCGCCGGAA  TGTCTTTG CCAGTACCATTACAATTTTGTG ACATTTG TAGAACACA TG AT G CTAAAAT G GAA TTTGAC         TTTAC TGG                                                                                                
  |||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||| ||||||||| || || | ||||||| | ||| ||||||         ||||| |||                                                                                                C
  AGCT TTCCCTTTTAA CGACC CCTGTGGCAATAAAACACCGGAAAC GCTTTGTGTGGCGGCCTT  ACAGAAAC GGTCATGGTAATGTTAAAACAC TGTAAAC GTTTTGTGT AC TA C GGTTTTG C CTT AAACTG         GTGTA ACT                                                                                                
 A    G           C     C                         A                  AC        A                      C       A         A  A  C A       C -   C      AAAAAAAAA     -   TAATAGTAAGATGGCAAGTCGTTTACACAGATCTTAGAAAGTTTGAAAAACAAGCTTCGCAAAAAGAGAGGATATCTCACGTCGTTGTTACCATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End