Plant MITE

SE2510734

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1964
Brachypodium distachyon
SE2510734
Tc1/Mariner
St14
Bd2:41896152-41896395
TA
TACTCCCTCCGTTCCTTAAAGAATGGCATATTAGCTTTCATAAGACAAGGCTTTGACCACAAATTACTATATTAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

                                         -               C                  A  GTAG        T      ACCACA      ATGAAG  CT    AT
TACTCCCTCCGTTCCTTAAAGAATGGCATATTAGCTTTCAT AAGACAAGGCTTTGA CACAAATTACTATATTAA GT    TTTATATG CATGAA      AGTATC      TA  TTTG  
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||    |||||||| ||||||      ||||||      ||  ||||   
ATGAGGGAGGCAAGGAATTTCTTACCGTATAATCGAAAGTA TTCTGTTCCGAAACT GTGTTTAATGATATAGTT TA    AAATATAC GTATTT      TCATAG      AT  AAGC  
                                         A               A                  C  AACA        T      ---GAA      ----CA  CT    AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510734

TACTCCCTCCGTTCCTTAAAGAATGGCATATTAGCTTTCATAAGACAAGGCTTTGACCACAAATTACTATATTAAAGTGTAGTTTATATGTCATGAAACCACAAGTATCATGAAGTACTTTTGATAACGAATCTAACGATACTAAGTTTATGTCATATAAAACAAATCTTGATATAGTAATTTGTGATCAAAGCCTTGTCTTAATGAAAGCTAATATGCCATTCTTTAAGGAACGGAGGGAGTA

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