Plant MITE

SE2550753

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1983
Brachypodium distachyon
SE2550753
PIF/harbinger
To4
Bd3:21598335-21598570
TAA
AGGCCCTGTTTGTTTGGACTTCAGCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCGCCTTTTTACACATGAAGCTGAGAAGCACCTCCGGATGTGCTTTTGGTGCTTCTAGCTGAGAAGCACGTCCGAAGGTGCTTCTCAGCTTCATGTGTAAATGGGAGAAGTGCTTTTGAGATTGCTAGAAGCACCAAAAGCTGAAGCAGAAGCCCAAACAAACAGGGCCT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 A    A                                         G   T                          C             G T   T
  AGGCCCTGTTTGTTTGG CTTC GCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTC CCT TTTACACATGAAGCTGAGAAGCACCT CGGATGTGCTTTT G GCT 
  ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| | ||| C
  TCCGGGACAAACAAACC GAAG CGAAGTCGAAAACCACGAAGATCGTTAGAGTTTTCGTGAAG GGG AAATGTGTACTTCGACTCTTCGTGGA GCCTGCACGAAGA T CGA 
AA                 C    A                                         A   T                          A             G -   T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550753

TAAGGCCCTGTTTGTTTGGACTTCAGCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCGCCTTTTTACACATGAAGCTGAGAAGCACCTCCGGATGTGCTTTTGGTGCTTCTAGCTGAGAAGCACGTCCGAAGGTGCTTCTCAGCTTCATGTGTAAATGGGAGAAGTGCTTTTGAGATTGCTAGAAGCACCAAAAGCTGAAGCAGAAGCCCAAACAAACAGGGCCTAA

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