Plant MITE

SE2540756

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1986
Brachypodium distachyon
SE2540756
CACTA
Ca2
Bd1:41630830-41631084
TAT
CACTACGTCACGTTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TAT      G   C T     AACC GA      CCAAAGT   TCAATTTGGCTTTAAAGTGCGTCAAATTCATATTCGTGGCATTTCAAAAGTGTTGAATATACTCGTGTTGACAAAAGTATGTGT
   CACTAC TCA G TAGAT    G  CGCATT       GCA                                                                                    
   |||||| ||| | |||||    |  ||||||       |||                                                                                    G
   GTGATG AGT C ATCTG    C  GCGTGA       TCG                                                                                    
TAT      G   A C     CAAA AG      --TACAA   GTATGAAACGAGTTTACATCAATTAAAAACAAAAATTGGCGTGAAAATCAAGAAGTTGGCGTCTAAAACGGTTATTTTCACGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2540756

TATCACTACGTCACGTTAGATAACCGGACGCATTCCAAAGTGCATCAATTTGGCTTTAAAGTGCGTCAAATTCATATTCGTGGCATTTCAAAAGTGTTGAATATACTCGTGTTGACAAAAGTATGTGTGACGCACTTTTATTGGCAAAATCTGCGGTTGAAGAACTAAAAGTGCGGTTAAAAACAAAAATTAACTACATTTGAGCAAAGTATGGCTAACATAGTGCGGACAAACGTCTACCATGAGGTAGTGTAT

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