Plant MITE

SE2510775

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2005
Brachypodium distachyon
SE2510775
Tc1/Mariner
St14
Bd2:45745426-45745670
TA
TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGCCTTTGACCACAAATTACTATGTCAAGATGTGGCTTATATGACATGAAATTAGTATTGCTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

                                                  C                      C   A     C                 ---      -------   --A   TC
TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAG CTTTGACCACAAATTACTATGT AAG TGTGG TTATATGACATGAAATT   AGTATT       GCT   GAT  
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||   ||||||       |||   |||  G
ATGAGGGAGGTAAGGAATTTCTAACCGTATAATCGAAAGTAATTCTGTTC GAAACTGGTGTTTAATGATACA TTT ACACC AATATACTGTACTTTGG   TCATAG       TGA   CTA  
                                                  C                      A   C     A                 TGT      TACTTCA   AAA   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510775

TACTCCCTCCGTTCCTTAAAGATTGGCATATTAGCTTTCATTAAGACAAGCCTTTGACCACAAATTACTATGTCAAGATGTGGCTTATATGACATGAAATTAGTATTGCTAGATTCGTTATCAAAAGTACTTCATGATACTTGTGGTTTCATGTCATATAAACCACACTTTAACATAGTAATTTGTGGTCAAAGCCTTGTCTTAATGAAAGCTAATATGCCAATCTTTAAGGAATGGAGGGAGTA

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