Plant MITE

SE2530781

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2011
Brachypodium distachyon
SE2530781
hAT
Hat39
Bd3:29092445-29093056
GATACGAG
TCAAGATGGCAATGGG

Secondary structure and sequence

TSD TIR

5'

3'

GATACGAG  AA            -   CCGAAACACGTAACCCCGCAGGGTTTTACCCCATTACGAAACGGGTTTGAGTCAAATCTAAATCCCGCGGGTTTGTTCGTGAGTCAAAAGTGAACGGGTTCAAACCCAGTCCGGCACTTTCCGATACCCGATGGGTCATGAAAAATATGATATAGCTCATATACATGGCCCAGTTCAGCCCATTCTTGCGAAAACCTTAGGTATATAACATGTTTCTAACCCTAATTCACTACTCGGCCCTCCCTAGTCCCCATTCTATCAACTTCCCGAGCCGCCCA
        TC  GATGGCAATGGG GCC                                                                                                                                                                                                                                                                                      
        ||  |||||||||||| |||                                                                                                                                                                                                                                                                                      C
        AG  CTACCGTTGCCC TGC                                                                                                                                                                                                                                                                                      
GAGGATAG  GC            A   TTCGGGCGGCCCATCACGGGCGGGGCGGGGTAGTGGCGTTGGGACTAGCGTCGGGGCAGGGGCGATTGCCCAAAGTAAAAAAGGGCAGGGACAGCTCTTGGGCTTGGGTACTCGTATGTGTTGTGTAGGTCCTTTTTTTCGTCGTGTTGCTGTGTTTTTGTAAGAGAAAATTGTCGTGTTACTACCATTTTGTTATATTACTACTGCACCTCGCCTCCCTCACCCGCGCGGCGCGGTACCTCTTTCGCTGACTCGCTCTCGCGCATCCTTGCCTCCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530781

GATACGAGTCAAGATGGCAATGGGGCCCCGAAACACGTAACCCCGCAGGGTTTTACCCCATTACGAAACGGGTTTGAGTCAAATCTAAATCCCGCGGGTTTGTTCGTGAGTCAAAAGTGAACGGGTTCAAACCCAGTCCGGCACTTTCCGATACCCGATGGGTCATGAAAAATATGATATAGCTCATATACATGGCCCAGTTCAGCCCATTCTTGCGAAAACCTTAGGTATATAACATGTTTCTAACCCTAATTCACTACTCGGCCCTCCCTAGTCCCCATTCTATCAACTTCCCGAGCCGCCCACTCCCTCCGTTCCTACGCGCTCTCGCTCAGTCGCTTTCTCCATGGCGCGGCGCGCCCACTCCCTCCGCTCCACGTCATCATTATATTGTTTTACCATCATTGTGCTGTTAAAAGAGAATGTTTTTGTGTCGTTGTGCTGCTTTTTTTCCTGGATGTGTTGTGTATGCTCATGGGTTCGGGTTCTCGACAGGGACGGGAAAAAATGAAACCCGTTAGCGGGGACGGGGCTGCGATCAGGGTTGCGGTGATGGGGCGGGGCGGGCACTACCCGGCGGGCTTCGTACCCGTTGCCATCCGGAGATAGGAG

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