Plant MITE

SE2510803

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2033
Brachypodium distachyon
SE2510803
Tc1/Mariner
St13
Bd1:8718825-8719107
TA
TACTCCCTCCGTCCGCGAAAGAGTGTACGTTTGGG

Secondary structure and sequence

TSD TIR

5'

3'

         C        AA               -----------    -  CAAGAAAATTAAACAAGCTAGAAAATGCATTGGAAATGTCCCAACCACCATCTCTCTCCTCTTTAATTCTTCCGCCTCCAATGAGCTAAGTGCA
TACTCCCTC GTCCGCGA  GAGTGTACGTTTGGG           GTTT TC                                                                                              
||||||||| ||||||||  |||||||||||||||           |||| ||                                                                                              T
ATGAGGGAG CAGGTGTT  TTCACATGCAAACCC           AGGT TT                                                                                              
         A        CA               AAAGTTTAAAC    G  TTCTCACATGAAGAGAGAAGATTTTCGTGAAATCTGATTCTTTTTTTTACGAAGAGAGAGTAACGTACCTTTAGTTTGGGTTATTGTAAAGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510803

TACTCCCTCCGTCCGCGAAAGAGTGTACGTTTGGGGTTTTCCAAGAAAATTAAACAAGCTAGAAAATGCATTGGAAATGTCCCAACCACCATCTCTCTCCTCTTTAATTCTTCCGCCTCCAATGAGCTAAGTGCATGAAGAAATGTTATTGGGTTTGATTTCCATGCAATGAGAGAGAAGCATTTTTTTTCTTAGTCTAAAGTGCTTTTAGAAGAGAGAAGTACACTCTTTTGTGGACAAATTTGAAACCCAAACGTACACTTACTTGTGGACAGAGGGAGTA

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