SE2510808

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2038
  • Brachypodium distachyon
  • SE2510808
  • Tc1/Mariner
  • St8
  • Bd4:35421719-35421957
  • TA
  • TACTCCCTCTGTACCTAATTAATTGGCACAGGTAATTTCGCCCAAAAAATCTTGCTATTTCTCGAAATCAACCTGCAGTCCATGTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
            A          T   A A   A    C  CC           C  T  CT                 C        -ATCA    --TTT    ---AAAAA   ACCTATA
TACTCCCTCTGT CCTAATTAAT GGC C GGT ATTT GC  AAAAAATCTTG TA TT  CGAAATCAACCTGCAGT CATGTTTT     GAAC     TTGC        TCC       
|||||||||||| |||||||||| ||| | ||| |||| ||  ||||||||||| || ||  ||||||||||||||||| ||||||||     ||||     ||||        |||        
ATGAGGGAGGCA GGGTTAATTA CCG G CCG TAAA CG  TTTTTTAGAAC AT AA  GCTTTAGTTGGACGTCA GTGTAGAA     CTTG     GACG        AGG       
            A          -   C G   G    A  --           A  T  AT                 C        GTTAA    CACCT    CACAACTA   CCTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End