Plant MITE

SE2510814

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2044
Brachypodium distachyon
SE2510814
Tc1/Mariner
St15
Bd5:19889527-19889745
TA
TACTCCCTCCGTCCCATAATATGAAGCACGCACGCATCCCAAGATTGTCAATTTAGCTAATCAAATATAAATT

Secondary structure and sequence

TSD TIR

5'

3'

                        A               A    TG       AGC    C      AA   AAATAATTA     T            -AA   CTTT
TACTCCCTCCGTCCCATAATATGA GCACGCACGCATCCC AGAT  TCAATTT   TAAT AAATAT  ATT         AAAAA TATATCATTAGA   GTT    
|||||||||||||||||||||||| ||||||||||||||| ||||  |||||||   |||| ||||||  |||         ||||| ||||||||||||   |||     
ATGAGGGAGGCAGGGTATTATACT CGTGCGTGCGTAGGG TCTA  AGTTAAA   ATTA TTTATA  TAG         TTTTT ATGTAGTAATCT   CAA    
                        C               A    TG       CTA    A      CA   AAAAAATTG     C            AAG   TAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510814

TACTCCCTCCGTCCCATAATATGAAGCACGCACGCATCCCAAGATTGTCAATTTAGCTAATCAAATATAAATTAAATAATTAAAAAATTATATCATTAGAAAGTTCTTTTGATAACGAATCTAATGATGTACTTTTTGTTAAAAAAGATACATATTTAATTAATCAAATTGAGTATCTAGGGATGCGTGCGTGCCTCATATTATGGGACGGAGGGAGTA

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