SE2520815

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2045
  • Brachypodium distachyon
  • SE2520815
  • Mutator
  • M19
  • Bd1:18143329-18143796
  • TACATTTAG
  • AGAGAAAAGTAATTTTTTCGTCCCTTGCTTGTCGGAAAGTTTATTTCTCGTCCTAAAAAACAATTCGTACTTTTTTCATCCCTCAACTTTCAAAACCGGACACTTTTAGTCCTTAAGGCTATCCGAAGCGGTTTGTCTAGCCACGTGCCCGGTTTGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TACATTT           A               -               A   C       -A     CAA             CA        C                        -    A G          C     G            C C   --     CTTAATCC      C    ------------- GACTGTTGAAATTGGCCGTCGTCATGCTCTGGATCTCGTCCAGGC
       AGAGAAAAGTA TTTTTTCGTCCCTTG CTTGTCGGAAAGTTT TTT TCGTCCT  AAAAA   TTCGTACTTTTTT  TCCCTCAA TTTCAAAACCGGACACTTTTAGTC CTTA G CTATCCGAAG GGTTT TCTAGCCACGTG C GGT  TTGCA        TGTGAC GCCG             A                                             
       ||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||  |||||   |||||||||||||  |||||||| |||||||||||||||||||||||| |||| | |||||||||| ||||| |||||||||||| | |||  |||||        |||||| ||||             |                                              
       TCTCTTTTCAT AAAAAAGCAGGGAGT GAACAGCCTTTCAAG AAA AGCAGGG  TTTTT   AAGCATGAAAAAA  AGGGAGTT AAAGTTTTGGCCTGTGAAAATCAG GAGT C GGTAGGTTTC CCAAA AGATCGGTGCAC G CCA  AGCGT        ATCAAA AAAG             A                                             
TTTACAT           G               T               C   A       AG     TTA             AC        A                        A    - A          A     A            A A   AA     --------      -    TGAATAAAAAAAA GTTAGTTCTATACCTACTACGTCTACCTCCTCTTCATTTTGGTCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End