SE2520827

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2057
  • Brachypodium distachyon
  • SE2520827
  • Mutator
  • M20
  • Bd5:2439397-2440157
  • GATTTTCTA
  • GAGAAAAGTCCATTTTGAACCCTAAACTTGTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
GATTTTCTA          C     G      A      -    ACTT          A   C   C   CT   C  G  T      C     A   -AT  A             -TAAA      -       -----TTTC    C  GCTAGGTTGGGATAATGATATGTCTTAGGATCTGGTGAGTGAGCACTGTATGTGGGTCCTGACTACTTATTCTTATGGAAAATTACCTGGAAAAAATTACCCACAATATTGTTAAAAAAACTACCAGGCATCTGGTGAGGACATCGGCATTCTTCCCTCGAAGCGAGCCCTCCCGACCTGGCGAGCGGCGACCTGGGCAGCAGTAGCGGAGCATACACGCAGGGAGCACCGGTTCC
         GAGAAAAGTC ATTTT AACCCT AACTTG TAGA    GTCTGAATCA ACC TAA CTT  AAT CC GG TTTCAG CCCTG CCT   CT ATCCCGGTCAATT     CCTTAG CCCGAAA         CTAT TG                                                                                                                                                                                                                                            
         |||||||||| ||||| |||||| |||||| ||||    |||||||||| ||| ||| |||  ||| || || |||||| ||||| |||   || |||||||||||||     |||||| |||||||         |||| ||                                                                                                                                                                                                                                             
         CTCTTTTCAG TAAAA TTGGGA TTGAAC ATTT    CAGACTTAGT TGG ATT GAA  TTA GG CT AAAGTC GGGAC GGA   GA TAGGGCCAGTTAA     GGAATT GGGCTTT         CGGC GT                                                                                                                                                                                                                                            
ATCTTTTAG          A     G      C      T    ----          C   A   T   AC   A  A  T      T     -   AAT  C             TTTGG      A       TACCACAAA    -  GACCAAAACAACTGCATTATGACCCTAACGACCGATTCTGATCTCCTTCCTGTGTTTACTACGAGAGCATAGAGAATAAAAGAATTAAAACTATAAAAATTGATACAAATCCTGTATTGATTGCTCTTATTGGCAATGATTAAAAGAATATGGCAGAAGATTATATAAAAATTGATACAACCGATTCCAGAAAACTATATGAAAGAATCCGCCCCTGCCGAACCGAGCGGCAGCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End