SE2510839

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2069
  • Brachypodium distachyon
  • SE2510839
  • Tc1/Mariner
  • St15
  • Bd5:18321850-18322068
  • TA
  • TACTACCTCCGTCCCAATATATGAGGCACGCACGCATTCCAAGATTTCAAATTTAACTAACAAAATATAAATTATATTTCATAAAAAATATGTCATTAGATTCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
    A                              A  CC      TCA          A     T           TT A  A                ---     AAT
TACT CCTCCGTCCCAATATATGAGGCACGCACGC TT  AAGATT   AATTTAACTA CAAAA ATAAATTATAT  C TA AAAATATGTCATTAGA   TTCGT   
|||| |||||||||||||||||||||||||||||| ||  ||||||   |||||||||| ||||| |||||||||||  | || ||||||||||||||||   |||||    
ATGA GGAGGCAGGGTTATATACTTCGTGCGTGCG AG  TTCTAG   TTAAATTGAT GTTTT TATTTAATATA  G AT TTTTATATAGTAATCT   AAGTA   
    G                              C  AA      CAG          G     T           CT C  C                TTC     AAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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