Plant MITE

SE2510846

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2076
Brachypodium distachyon
SE2510846
Tc1/Mariner
St62
Bd1:3210956-3211280
TA
TACTCCCTCCGTCCGCTTTTACCGGCAGCGTT

Secondary structure and sequence

TSD TIR

5'

3'

               C         CA     -----AT   AACAGACAAGTCCATTTATATGAGGCGTTGCTGGATACAAATATTAGTACTACCCCTATTCCGCGTCCATCTATACGAACGGCCAATGCAGAGCGCACACGATGCGTGGGGCGAGGGAAGCGCG
TACTCCCTCCGTCCG TTTTACCGG  GCGTT       TTG                                                                                                                            
||||||||||||||| |||||||||  |||||       |||                                                                                                                             
ATGAGGGAGGCAGGC AAAATGGTC  CGCGA       AAC                                                                                                                            
               A         --     AATCAAA   GTGGGTATGGTTCCGTCAGAGCCCTCAACTACAAAACCTCTTTGACGGGCTCACGTTCCAGGGTGGACGCCAAACCAACGGGTTAGTTAACTATAATCATCCGACTAATAAGCGGCCGGTGCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510846

TACTCCCTCCGTCCGCTTTTACCGGCAGCGTTATTTGAACAGACAAGTCCATTTATATGAGGCGTTGCTGGATACAAATATTAGTACTACCCCTATTCCGCGTCCATCTATACGAACGGCCAATGCAGAGCGCACACGATGCGTGGGGCGAGGGAAGCGCGTGCGTGGCCGGCGAATAATCAGCCTACTAATATCAATTGATTGGGCAACCAAACCGCAGGTGGGACCTTGCACTCGGGCAGTTTCTCCAAAACATCAACTCCCGAGACTGCCTTGGTATGGGTGCAAAAACTAAAGCGCCTGGTAAAAACGGACGGAGGGAGTA

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