Plant MITE

SE2510854

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2084
Brachypodium distachyon
SE2510854
Tc1/Mariner
St19
Bd2:12154247-12154490
TA
TACTCCCTCTGTTCCTTAAATTAAGGCCTATATTGTTTCCTTTGACCGAGCCTTTGACCAAGAATTAGTCTATTAATATATAACTTTTGTGAAATAAAATTGATATCATTGTATTCG

Secondary structure and sequence

TSD TIR

5'

3'

                T      A   C          C                       A    G      A  A   A    T     A     AT G   TC      TT  TATTCAA
TACTCCCTCTGTTCCT AAATTA GGC TATATTGTTT CTTTGACCGAGCCTTTGACCAAG ATTA TCTATT AT TAT ACTT TGTGA ATAAA  T ATA  ATTGTA  CG       
|||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||| |||| |||||| || ||| |||| ||||| |||||  | |||  ||||||  ||        
ATGAGGGAGGCAAGGA TTTAAT CCG ATATAACAAA GAAACTGGCTCGGAAACTGGTTC TAAT AGGTAG TG ATA TGAA ACACT TGTTT  A TAT  TGATAT  GT       
                C      C   C          A                       C    G      C  C   C    T     A     -- G   --      TT  TCACGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510854

TACTCCCTCTGTTCCTTAAATTAAGGCCTATATTGTTTCCTTTGACCGAGCCTTTGACCAAGAATTAGTCTATTAATATATAACTTTTGTGAAATAAAATTGATATCATTGTATTCGTATTCAAAAGCACTTGTTTATAGTTATGATTTGTATCACATAAGTCATACGTCGATGGAGTAATCCTTGGTCAAAGGCTCGGTCAAAGAAAACAATATACGCCCTAATTTCAGGAACGGAGGGAGTA

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