Plant MITE

SE2520859

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2089
Brachypodium distachyon
SE2520859
Mutator
M23
Bd3:28613627-28613864
GTATATTTA
GTATATTTAGGGTTAATTTGATATATGTCACTGCAATTTTGGTGAATTTGAAAAACGCTACTACAATTCTCGTCCTTTCAAAAATGTCATTGCGGT

Secondary structure and sequence

TSD TIR

5'

3'

         TTA               A  T                    T      C    CTA     C     C   C                 GGCATCTTTTAA  CATTGGAGTGGAATT
   GTATAT   GGGTTAATTTGATAT TG CACTGCAATTTTGGTGAATT GAAAAA GCTA   CAATT TCGTC TTT AAAAATGTCATTGCGGT            CC               
   ||||||   ||||||||||||||| || |||||||||||||||||||| |||||| ||||   ||||| ||||| ||| |||||||||||||||||            ||                
   TATATA   CCCAATTAAACTATA AC GTGATGTTAAAACCGCTTAA TTTTTT TGGT   GTTAA AGTAG AAA TTTTTACGGTGATGTTA            TA               
ATT      ---               C  C                    -      T    TAC     T     A   C                 -----------A  CCTCTAAGAAACTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520859

GTATATTTAGGGTTAATTTGATATATGTCACTGCAATTTTGGTGAATTTGAAAAACGCTACTACAATTCTCGTCCTTTCAAAAATGTCATTGCGGTGGCATCTTTTAACCCATTGGAGTGGAATTTTTCAAAGAATCTCCATAATTGTAGTGGCATTTTTCAAAAGATGATAATTGCATTGGTTTTTTTTAATTCGCCAAAATTGTAGTGCCACATATCAAATTAACCCATATATTTA

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