SE2550860

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2090
  • Brachypodium distachyon
  • SE2550860
  • PIF/harbinger
  • To10
  • Bd1:32555300-32555602
  • TTA
  • AGAGCAAGATTAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         T     -TCTATA           GCTT       -------------------------------------------   TCTAAGCATTACCATGTCATCTTTAAATAGTATAATAGTTAGCATGTATAATAAGTTGGTTATAAGAAATACTATTTTATTAA
  AGAGCAAGA TAATA       GCGTGCTGCTG    TGCTGCT                                           GGT                                                                                   
  ||||||||| |||||       |||||||||||    |||||||                                           |||                                                                                   T
  TCTCGTTCT ATTAT       TATTCGACCGA    TGTTCTT                                           TCT                                                                                   
AT         T     CACCCAA           ----       AATTTTATAATAAAACTACGAATCAACCACTTTTCTCTTCTTC   CTCTTCTCTTCACTCAACAATTGATCATCGGTCGACGTTGTGCACGAGGATCAGTGAGACACTCTGACATTACACCCGGACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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