SE2530865

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2095
  • Brachypodium distachyon
  • SE2530865
  • hAT
  • Hat43
  • Bd3:4513274-4513477
  • GATATTGG
  • GATATTGGCAGTGGCGGAGGCAGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
        GG   T              ------------CCA   CAGCCCTAGCCCTGGCCCCCTTATGATTTGGAAATTTTACTTTAGTCCCTATATAGCATTTGCT
  GATATT  CAG GGCGGAGGCAGGGA               GGC                                                                
  ||||||  ||| ||||||||||||||               |||                                                                 
  TTATAG  GTC CCGCCTCTGTCTTT               CGG                                                                
GG      --   C              TTTTCATATTCTTCC   TCTTATCTGCCCTACTAAACATCCCCCCCGCTTTGCATTTTTATACTTCAAATATACTACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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