SE2520866

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2096
  • Brachypodium distachyon
  • SE2520866
  • Mutator
  • M39
  • Bd2:11632487-11633031
  • GTATGGATA
  • GTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
          GATAA  T             G C     A         A       A   TAGTTTAACAAGTTGCAAAATGAGCAAAACTAGTCTTATAAGTTGAGATTCGGATTGCTTAGAAGTCCAAACCAATCAGGCGTTGACACGTGTCCTGTGTTTTTTACTGAAAACGCCATGCAGTTATTGCGCATCCCACTCACCTCCTGAGACGTGGCCATCAGGTCCGAAGGAGGCGGTGCCTGCGAGGTGGACAACTCCTGGGTGAACCATGCCG
     GTATG     AG TAATTGCACCACT G CTGAC ACTTGAGAG TGGGAGC GTT                                                                                                                                                                                                                         
     |||||     || ||||||||||||| | ||||| ||||||||| ||||||| |||                                                                                                                                                                                                                          
     TATGC     TC ATTAACGTGGTGA C GGTTG TGAACTCTC ACTCTCG TCA                                                                                                                                                                                                                         
ATAGG     -----  C             G A     C         C       -   ACGTTTTCTCGTTTTGATCAGGCTTTTCAACTCTAAGCCCTCGTAAAATCAGGTTAATCAGATTTAACCTGTGTACTGTCGATCTCCCTCAGGGCAGCCCGGCACCTTTAAGACGTTTTTTCGGGGGGTATGTCCTTGTTAAACATATGTACGGCTGGTTACTCCGGTAAGCTCTGCTTCCTCTCAAAGGAGATGACCTAAAAGTGGGCCCTTAGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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