SE2550892

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2122
  • Brachypodium distachyon
  • SE2550892
  • PIF/harbinger
  • To46
  • Bd3:57267229-57267389
  • GAT
  • ATATACTTAGGGATGCAAACGGGATCCCGTGAAAGTCCCGCTTCTAGTTCATTTTTCAAATCTTCTATTCAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
  G    A  T    A  C           C                       T                     A    GT
   ATAT CT AGGG TG AAACGGGATCC GTGAAAGTCCCGCTTCTAGTTCA TTTTCAAATCTTCTATTCAAA TTTT  
   |||| || |||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||   
   TATA GA TCCC AC TTTGCCCTAGG CGCTTTCAGGGTGAAGATCAAGT AAGAGTTTAGAGGATAAGTTT AAGA  
TCA    -  T    -  T           A                       T                     -    CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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