SE2520893

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2123
  • Brachypodium distachyon
  • SE2520893
  • Mutator
  • M29
  • Bd3:16570524-16571179
  • ATGCAAATA
  • TGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
   A    AATA                                 C        C   C               T                                                 C     C    G                    --TCAATT    GTTTTTCATATTGACCTAAATGCTCCTAGTCACCGGACTATTATCTTTTGAACATTATGTTGTTGAAATGCTCGTGAGCACGTATGCTGAAATTATGATGAGTTTTAGTATATTATTCTTCTGAAGCTATTATGAATTTTGTGATGTTAGGTAAAATCAATGGA
    TGCA    GAGAGAATTCCATATTTGCCACTGAAAATTTGC CATATGTC AAA GCCATTCAAAATTTG CTGTTCTAAATGTGCCACTCAAATTTTGCATGGGGTACAAATATGCCAC GCCGT AGTT ACCGCTAGTTGACCGTTAAG        GTCA                                                                                                                                                                    
    ||||    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||        ||||                                                                                                                                                                     
    ACGT    CTCTTTTAAGGTATAAACGGTGACTTTTAAACG GTATATAG TTT TGGTGAGTTTTAAAC GACAAGGTTTATACGGTGAGTTTAAAACGTGCCCCATGTTTATACGGTG TGGCA TCAA TGGCGATCAACTGGCAATTC        CTTT                                                                                                                                                                    
ATAA    ---A                                 A        A   A               T                                                 A     A    G                    TTTCTCTA    TCTGTTAAAGCGGGATCCATCATACAACTAAAAGGGAAATGTTGTTTCGTGAGTAAAATCTTTTGAATATTAAGGCCAAAAAATTCTACGGTCATTGTGTTGTAAATCCTCATTCAAAGTCGTTATTACTAAAACCGTACTTTTAACTTTTAAACTCGTCGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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