SE2520899

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2129
  • Brachypodium distachyon
  • SE2520899
  • Mutator
  • M15
  • Bd3:15915858-15916082
  • AATTTTAAT
  • GGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTTAAT   CGTG         C   -------------------     -   T TTAATCAAAAGGCTTAAATTTCAATGATCGTATCATAATCGTTGGATTAATATATGGATACCAT
         GGT    GTTATATCT AGT                   GGACG GTT T                                                                
         |||    ||||||||| |||                   ||||| ||| |                                                                T
         CCA    CGATATAGA TCA                   CTATT AGC T                                                                
AATTTTAAG   -AAA         T   GCTAACTAAAAATCAATCT     C   - ATATTCAGCTAAATAGTCGGTTACCTATACCAGACACAAACTTGCCAACTTTTTACCTCTCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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