SE2510909

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2139
  • Brachypodium distachyon
  • SE2510909
  • Tc1/Mariner
  • St15
  • Bd1:33347443-33347662
  • TA
  • TACTCCCTTCCTCCCAATATACGAGGCACGCACGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
          C     A    C              CGCG         CG C       C  T                --A        A            -AA  TTATT
TACTCCCTTC TCCCA TATA GAGGCACGCACGCA    TCCCAAGAT  T AATTTAA TA CAAAATATAAATTATG   CGTAAAAA TATATCATTAGA   GT     
|||||||||| ||||| |||| ||||||||||||||    |||||||||  | ||||||| || ||||||||||||||||   |||||||| ||||||||||||   ||      
ATGAGGGAGG AGGGT ATAT CTCCGTGCGTGCGT    AGGGTTCTA  G TTAAATT AT GTTTTATATTTAATAT   GTATTTTT ATATAGTAATCT   CA     
          C     A    A              ----         AG T       A  T                AAA        -            AAG  TTAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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