Plant MITE

SE2550912

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2142
Brachypodium distachyon
SE2550912
PIF/harbinger
To4
Bd3:21598335-21598570
TTA
AGGCCCTGTTTGTTTGGGCTTCTGCTTCAGCTTTTGGTGCTTCTAGCAATCTCAAAAGCACTTCTCCCATTTACACATGAAGCTGAGAAGCACCTTCGGACGTGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                      T                   C                     T  CA                               C      -CTCA   A
  AGGCCCTGTTTGTTTGGGCTTC GCTTCAGCTTTTGGTGCTT TAGCAATCTCAAAAGCACTTC CC  TTTACACATGAAGCTGAGAAGCACCTTCGGA GTGCTT     GCT 
  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||     ||| G
  TCCGGGACAAACAAACCTGAAG CGAAGTCGAAAACCACGAA ATCGTTAGAGTTTTCGTGAAG GG  AAATGTGTACTTCGACTCTTCGTGGAGGCCT CACGAA     CGA 
AT                      T                   A                     C  AA                               A      AACCA   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550912

TTAGGCCCTGTTTGTTTGGGCTTCTGCTTCAGCTTTTGGTGCTTCTAGCAATCTCAAAAGCACTTCTCCCATTTACACATGAAGCTGAGAAGCACCTTCGGACGTGCTTCTCAGCTAGAAGCACCAAAAGCACATCCGGAGGTGCTTCTCAGCTTCATGTGTAAAAAGGCGAAGTGCTTTTGAGATTGCTAAAAGCACCAAAAGCTGAAGCTGAAGTCCAAACAAACAGGGCCTTA

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