SE2520913

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2143
  • Brachypodium distachyon
  • SE2520913
  • Mutator
  • M29
  • Bd2:56499910-56500533
  • ATGCAAAAT
  • TGCAAAATGAGATAATTCCATATTTGCCACTGAGAATTTGCCCATATGCCCAAATGCCACTGAAAATTTGTCTGTTCCAAATATGCCACTCAAATTTTGCATGGAGTACAAATATGCCCCTACCGTTAATTGACCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
   A    AAA     T                           C         C                                     C          C   GA           C C  A      A        ---     A GAGATGAAAACACAATTTTGCCCTGATAGTATGTTGATTTTCCATCTACAACAAAGTACTCATTTTAAAGAACTTATAATTCCAGATTTTTAAGATGTTAGTAAGACACCCTTTTGGAGTAAGTTTCAGCAATAACGATTTTGGCATGAAAAATTGAAAATTTCAG
    TGCA   TGAGA AATTCCATATTTGCCACTGAGAATTTG CCATATGCC AAATGCCACTGAAAATTTGTCTGTTCCAAATATGCCA TCAAATTTTG ATG  GTACAAATATG C CT CCGTTA TTGACCGT   TAAGT A                                                                                                                                                                      
    ||||   ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||  ||||||||||| | || |||||| ||||||||   ||||| |                                                                                                                                                                       
    ACGT   ACTCT TTAAGGTATAAACGGTGACTCTTAAAC GGTATACGG TTTACGGTGACTTTTAAACGGACAAGGTTTATATGGT AGTTTAAAAC TAC  CATGTTTATAC G GA GGCAAT AACTGGCG   AACTG G                                                                                                                                                                      
TAAA    ---     C                           A         A                                     T          A   AC           A T  C      C        ATC     - CAATTCAGTTAACAGTCAATAAAGTATAACTAGATTTATGGGATCCAGTCTTTTTTTTGTTTCAACATGATTTAATCTCTGTTCATTAAGGCCGGCCTTCCTCATATAATAAGACGACTTAGATGATACTTAAACCACTACAATTCATTTTAGTTCCTTTTACGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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