SE2520917

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2147
  • Brachypodium distachyon
  • SE2520917
  • Mutator
  • M14
  • Bd2:18102301-18102878
  • AATAGAAAA
  • GGGTTAATTGGATCTACGCCA

Secondary structure and sequence

TSD    TIR
5'



3'
AATAGAAAA                C    CTCTCTATTC        A  AA                     C   A  A                 C           AC         C      CTTAAG    A    ------    CA    -   C     TT C   A -      -    A   AC   AATA   TATTTACAAC   C    GTAC    -GAG        -------AAG G    AAA     AAAAC    AAATT      AAAATTCAAACTTTTCAGAAAATC
         GGGTTAATTGGATCTA GCCA          CACCGGTT GA  TATGCCATTACAAAAACTTGA TTG AG AATGCCACTCTAACTTT TTATACCTCTA  TATGCCATT TGTCCA      ACCA TTAT      TGTT  TAAA ATG ATGTA  T AGC C GTACAA CAGT TTT  CAT    CCC          GTT AGCA    GTTC    TCTCTTCC          C CCAT   CGTTC     ATTC     TGGCCT                        
         |||||||||||||||| ||||          |||||||| ||  ||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||  ||||||||| ||||||      |||| ||||      ||||  |||| ||| |||||  | ||| | |||||| |||| |||  |||    |||          ||| ||||    ||||    ||||||||          | ||||   |||||     ||||     ||||||                        A
         CCCAATTAACCTAGAT CGGT          GTGGCCAA CT  ATACGGTAATGTTTTTGAACT AAC TC TTACGGTGAGATTGAAA AATATGGAGAT  GTACGGTAA ACAGGT      TGGT AATG      ACAG  ATTT TGC TATAT  A TCG G TATGTT GTCA AAA  GTA    GGG          CAG TTGT    TAAG    GGAGAAGG          G GGTG   GCGAG     TAGG     GCTGGG                        
AAAAGATAA                A    AATATTAAAA        C  CA                     A   C  A                 A           GA         A      ----TA    -    CATATT    --    A   C     TT -   A A      T    A   AA   ----   --------TT   T    ----    ATAA        AGGATAATAG G    --C     -GAGA    -----      ATTGAACTTACAAACTTAAAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End