SE2520919

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2149
  • Brachypodium distachyon
  • SE2520919
  • Mutator
  • M42
  • Bd2:19521623-19522129
  • TTATAAAAT
  • TTATAAAATGAGTAAAATGCACCGTAGGTCCTAAAACTATTCAGGGTGTGTCAAGTGAGTCCTAATTCTATCAAAGTGCATATTTGGACCCTAATTCTTTGTAAGTTGTTCACGCGTGGTCCTAATCGAGCCCGAGCCACTGCTGACCGGCCAGGTGTCAAGTTGACTTCCACGCTGGCTAATTGTCGGGCTGCTAAAAATTGCAAATAGGCCCAATCTTTCAATTTTACTC

Secondary structure and sequence

TSD    TIR
5'



3'
         AAT                        A      T A                  C                          C                           T                     A            C     T          T     C           --C   C    AA   T     A       A      --------        CT ---ATCTC  -T   CTTT
   TTATAA   GAGTAAAATGCACCGTAGGTCCTA AACTAT C GGGTGTGTCAAGTGAGTC TAATTCTATCAAAGTGCATATTTGGA CCTAATTCTTTGTAAGTTGTTCACGCG GGTCCTAATCGAGCCCGAGCC CTGCTGACCGGC AGGTG CAAGTTGACT CCACG TGGCTAATTGT   GGG TGCT  AAA TGCAA TAGGCCC ATCTTT        CAATTTTA  C        GA  GTC    
   ||||||   |||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||||||||   ||| ||||  ||| ||||| ||||||| ||||||        ||||||||  |        ||  |||     
   AATATT   CTCATTTTACGTGGCATCCAGGAT TTGATA G CCCACACAGTTCATTCAG ATTAAGATAGTTTCACGTATAAACCT GGATTAAGAAACATTCAACAAGTGTGT CCAGGATTAGCTCGGGCTCGG GACGACTGGCCG TCCAC GTTCAACTGA GGTGC ACCGATTGACA   CTC ACGA  TTT ACGTT ATCCGGG TGGAAA        GTTAAAGT  G        CT  TAG    
TAA      ---                        G      T C                  A                          A                           T                     C            A     C          C     A           CAA   A    CC   T     -       C      AATAAAAC        TT CCCCACCC  CT   CCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End