Plant MITE

SE2510936

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2166
Brachypodium distachyon
SE2510936
Tc1/Mariner
St3
Bd2:42037744-42038007
TA
TTTCTCCGTTCCTAAATATAAGAAGTCCTAGCTTTGCCCTAAACCAAACTTCTTGAAGTTTGACCAAGTTTATAGAA

Secondary structure and sequence

TSD TIR

5'

3'

TACTA           C                   C    C     AC                                 ------      ATGTAAGATTTACAATATCAAATTAGTATACTATGAAAATAA
     TTTCTCCGTTC TAAATATAAGAAGTCCTAG TTTG CCTAA  CAAACTTCTTGAAGTTTGACCAAGTTTATAGAA      AAATCT                                          
     ||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||      ||||||                                           
     AGGGAGGCAAG ATTTATATTCTTCAGGATC AAAC GGATT  GTTTGAAGAACTTCAAACTGGTTTAAATATTTT      TGGTTG                                          
  ATG           T                   C    A     CA                                 TGTAAA      TACATCTTGAGGTTCAATCAAAATAATTTAGACAGTAATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510936

TACTATTTCTCCGTTCCTAAATATAAGAAGTCCTAGCTTTGCCCTAAACCAAACTTCTTGAAGTTTGACCAAGTTTATAGAAAAATCTATGTAAGATTTACAATATCAAATTAGTATACTATGAAAATAATTATAATGACAGATTTAATAAAACTAACTTGGAGTTCTACATGTTGGTAAATGTTTTTATAAATTTGGTCAAACTTCAAGAAGTTTGACTTAGGACAAACCTAGGACTTCTTATATTTATGAACGGAGGGAGTA

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