SE2550946

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2176
  • Brachypodium distachyon
  • SE2550946
  • PIF/harbinger
  • To14
  • Bd3:40757735-40758058
  • TTA
  • ACAGCTCGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             AA    TCATTTGGGCCTAGAATTCTGGAATTCATTTTGAATTCCAGAAACGAACTTGTTTGGTGGCACGGAATTGGCCACAAGTATTCAATCTCAAATTCCATGGAATTGCACTATAACTAACCCAAATTCCTTTCCAAAAGTCATC
  ACAGCTCGTTTGG  CCCA                                                                                                                                              
  |||||||||||||  ||||                                                                                                                                               
  TGTCGGGCAAACC  GTTG                                                                                                                                              
AT             --    GTAACAAAGTAAAGTAAACCATCTTTACTTTACTTTAGGTTAGAAGCCATCCTAAAGTAAACCAACTTAAACTTAAGGAACAAGTTTTTAGTACAAACAGATGGTGTACCTAAACATTTCACTGTATGTTAAGGTCTCTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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