SE2520987

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2217
  • Brachypodium distachyon
  • SE2520987
  • Mutator
  • M30
  • Bd2:35348410-35348535
  • GGTCGTAAG
  • CGTAAGCGAGAGGGATCCTCTGACTTAATGACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 GGT  TAA C  GAG                ------      CACA      T   T    ACCC
    CG   G GA   GGATCCTCTGACTTAA      TGACTT    GTCACT ACA GTGG    
    ||   | ||   ||||||||||||||||      ||||||    |||||| ||| ||||     
    GC   C CT   CCTAGGGGACTGAATT      ACTGAA    CAGTGA TGT CACC    
GAAT  TGG -  GAA                TCAGTC      ATAC      C   C    CCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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