SE2520993

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2223
  • Brachypodium distachyon
  • SE2520993
  • Mutator
  • M43
  • Bd2:1970012-1970479
  • AATGTTTTT
  • TTGAGTAAAATGCATCAGAGGTCCCAATTCTCTCGCAAAAGTTCCAATTTAGTCCTAATTTTTTGATACTGCACATTTTAGTCCTAATAGTTTCATAAGTGATTCATCACAGGTCCTATTGTGTTTCGGGCGTGTCTCTCCTACTCACGTGGCTATTTGGGCCCACATGTCAGGTGCCAAGGTGGACGCACTTTTGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
AATGTTT                               C       A       T                  T           T                   G  A      A              T           C      A  CAC                             CAA          C  T     AAACAAAA      ---AAGGG  GA GGC
       TTGAGTAAAATGCATCAGAGGTCCCAATTCT TCGCAAA GTTCCAA TTAGTCCTAATTTTTTGA ACTGCACATTT AGTCCTAATAGTTTCATAA TG TTCATC CAGGTCCTATTGTG TTCGGGCGTGT TCTCCT CT   GTGGCTATTTGGGCCCACATGTCAGGTGC   GGTGGACGCA TT TGCTA        CCTGCC        CC  C   
       ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||| |||||||||||||| ||||||||||| |||||| ||   |||||||||||||||||||||||||||||   |||||||||| || |||||        ||||||        ||  |    
       AACTCATTTTACGTAGTTTCCAGGGTTAAGA AGCGTTT CAGGGTT AATCAGGGTTAAGAAACT TGACGTGTAAA TCAGGATTATCAAAGTATT AC AAGTAG GTCCAGGATAGCAC AAGCCCGCGCA AGAGGA GG   CACCGATAAACCCGGGTGTATAGTCCACG   CCACCTGCGT AA ACGAT        GGACGG        GG  G   
TTTTTGT                               A       C       C                  T           T                   A  C      G              C           C      C  CTA                             ATC          A  C     -CTTTAGG      AGAAAGAA  AA AGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End