SE2531004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2234
  • Brachypodium distachyon
  • SE2531004
  • hAT
  • Hat41
  • Bd3:1962802-1962975
  • GTCTGCTA
  • GCTACAGTGGCGAAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
GTCT  --TA        A    A  - AAAAAATTCATTGGGTTCACTCAGCAATAAAAGTAGGTTCCAATTAGTTATAAACAGTAAAT
    GC    CAGTGGCG AGTT GA A                                                              
    ||    |||||||| |||| || |                                                               
    CG    GTCACCGC TCGA CC T                                                              
  AT  TCTG        C    -  G ACATCGGTAACCCAAGTTTACTTGGGTTACTTTAATCCGATTAGGGAAATATTAGTAGTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End