Plant MITE

SE2531005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2235
Brachypodium distachyon
SE2531005
hAT
Hat20
Bd4:32422202-32422378
AGCTCAGG
AGCTCAGGTAG

Secondary structure and sequence

TSD TIR

5'

3'

        C   T  AGCT   CAATT           -A              T          C           AAA        T ATA
    AGCT AGG AG    GCA     GTGACTCTCAG  TACCTTTTGACCCT CTTAGTTCAA CAAATGAACTA   TTTTAAAA G   
    |||| ||| ||    |||     |||||||||||  |||||||||||||| |||||||||| |||||||||||   |||||||| |    
    TCGA TCC TC    TGT     CACTGGGAGTC  ATGGGAAACTGGGA GAATCAAGTT GTTTACTTGAT   AAGGTTTT C   
GGAC    A   -  ACTT   ---AC           CC              C          T           CAA        T AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2531005

AGCTCAGGTAGAGCTGCACAATTGTGACTCTCAGATACCTTTTGACCCTTCTTAGTTCAACCAAATGAACTAAAATTTTAAAATGATACAACTTTTTGGAAAACTAGTTCATTTGTTTGAACTAAGCAGGGTCAAAGGGTACCCTGAGGGTCACCATGTTTCACTCCTAAGCTCAGG

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