SE2551042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2272
  • Brachypodium distachyon
  • SE2551042
  • PIF/harbinger
  • To16
  • Bd4:2923174-2923471
  • TAA
  • AGGCCTTGTTTGGTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA               T    ---  A  -    ----  C    -  -    -    TA   -------   ----  GT  GGGTGTTCACCCAAAACTCTCAAAAATCCAAAACACTAGTGTTTTCTTAGAAGAACACTAGTATGAGAAGTGTTTTAAT
  AGGCCTTGTTTGGTG TGGT   GT TT TTTT    AG CACT AG TGTT TTGG  TTT       GAG    GG  TT                                                                               
  ||||||||||||||| ||||   || || ||||    || |||| || |||| ||||  |||       |||    ||  ||                                                                                
  TCCGGAACAAACCAT ATCT   AA AC CCAC    GA TCCC TA TAGG GAGG  TTT       GTG    TT  GG                                                                               
AA               G    CAA  -  C    AAAA  -    A  A    T    --   AACTTTT   ATCT  --  AGTTTACCAACAAACCATGCTTCCCAAATCTCCCCTAATAGGGATCAAAAGGTGGTGTTTGTAAGGTAAAAACATGGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End