SE2551052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2282
  • Brachypodium distachyon
  • SE2551052
  • PIF/harbinger
  • To26
  • Bd2:9488536-9488783
  • TAA
  • AGGGTGTGTTTGGTTGGGAACCAACACTAGCCATGCCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G GAA    CA      A        ---A    GCAGCCAATGATGTTTTGGCTCTTGTTTGGTTTGTTGCCAAAAATTTGGTTGCCAATATGAAGTACTACTTCTCA
  AGGGTGTGTTTGGTT G   CCAA  CTAGCC TGCCAAAT    ATTG                                                                           
  ||||||||||||||| |   ||||  |||||| ||||||||    ||||                                                                            
  TCCCACACAAACCAA C   GGTT  GATCGG ATGGTTTA    CGTT                                                                           
AA               A -AC    TA      G        CACC    CTTAACCAAACGATTAAAAAACCGATTGTTAAACGGTTGGGAGTGAAACAGTTGATAAACCGTTCTTATACACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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