Plant MITE

SE2511056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2286
Brachypodium distachyon
SE2511056
Tc1/Mariner
St14
Bd2:50955231-50955475
TA
TACTCCCTCCGTTCCTCAAAAGAGGGCATATTAGCTTTCATTAAGACAAGGCTTTGACCAGAAATTACT

Secondary structure and sequence

TSD TIR

5'

3'

      C         CA                            C           -C    A     ATGTTAAG    G  TTATATGGCATGAAATTAGTATCGTTAGATTCGTTATCAAAA
TACTCC TCCGTTCCT  AAAGAGGGCATATTAGCTTTCATTAAGA AAGGCTTTGAC  AGAA TTACT        ATGT AT                                          
|||||| |||||||||  |||||||||||||||||||||||||||| |||||||||||  |||| |||||        |||| ||                                           
ATGAGG AGGCAAGGA  TTTCTCCCGTATAATCGAAAGTAATTCT TTCCGAAACTG  TCTT AATGA        TAAT TA                                          
      A         AC                            A           AT    -     ------GA    -  TGGACCGAACATTCTATACTCTGGTGTTCATAATATTTTATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511056

TACTCCCTCCGTTCCTCAAAAGAGGGCATATTAGCTTTCATTAAGACAAGGCTTTGACCAGAAATTACTATGTTAAGATGTGATTTATATGGCATGAAATTAGTATCGTTAGATTCGTTATCAAAAGTATTTTATAATACTTGTGGTCTCATATCTTACAAGCCAGGTATTAATAGAGTAATTCTTAGTCAAAGCCTTATCTTAATGAAAGCTAATATGCCCTCTTTCAAGGAACGGAAGGAGTA

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