Plant MITE

SE2531063

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2293
Brachypodium distachyon
SE2531063
hAT
Hat19
Bd3:22658113-22658681
ATTCGGTG
TCGGTGTCAGGATGGCAATG

Secondary structure and sequence

TSD TIR

5'

3'

AT    TG              AA    GAAAAAGTGGATATCCAGCCCATGGATCGCGGGTATGGAGCGGCATCTCGATCCATGGATATCCAGCCATGGATACCCGCCAAGTCATGTAGTGGACACGGATAGAAAATTGGATCCATGGATATCCATGGATACCCGCTATTTAATAAAATAAATAAATTACTGACGTGTTGGTCCATTTTCAATCATATACTCATATAAATAGTTCTCTTCTCCCACAATTCTAACCCTAATTTTCCTCCTTCAGTTTCGCTCCC
  TCGG  TCAGGATGGCAATG  TACT                                                                                                                                                                                                                                                                 
  ||||  ||||||||||||||  ||||                                                                                                                                                                                                                                                                 A
  GGCT  AGTCCTACCGTTGC  CCAT                                                                                                                                                                                                                                                                 
GT    TA              --    ACCTGCCCAGCTGGTGTAGGTATAGGTATAGGTATAGGTAGAGGTTTGGCTGATAGGTAGGTGCTTTTATAGGCACCTAGATTTTGTTATAGGCGTAGGTATAGGTGTCCATACGCTCATAGGTACCTAATAGGTATAGGTATGTCATATGTAGTATTTGTCGTCGTTGTAGTCGTATATGTTGTTATCGTCATATGTTGTCGTTTGTTATAGGTAATAAAATAATTTATGGCCCACCGAACTCCTCACCGCCGAGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2531063

ATTCGGTGTCAGGATGGCAATGAATACTGAAAAAGTGGATATCCAGCCCATGGATCGCGGGTATGGAGCGGCATCTCGATCCATGGATATCCAGCCATGGATACCCGCCAAGTCATGTAGTGGACACGGATAGAAAATTGGATCCATGGATATCCATGGATACCCGCTATTTAATAAAATAAATAAATTACTGACGTGTTGGTCCATTTTCAATCATATACTCATATAAATAGTTCTCTTCTCCCACAATTCTAACCCTAATTTTCCTCCTTCAGTTTCGCTCCCACGAGCCGCCACTCCTCAAGCCACCCGGTATTTAATAAAATAATGGATATTGTTTGCTGTTGTATACTGCTATTGTTGTATATGCTGATGTTGCTGCTGTTTATGATGTATACTGTATGGATATGGATAATCCATGGATACTCGCATACCTGTGGATATGGATGCGGATATTGTTTTAGATCCACGGATATTTTCGTGGATGGATAGTCGGTTTGGAGATGGATATGGATATGGATATGGATGTGGTCGACCCGTCCATACCCGTTGCCATCCTGAATTCGGTG

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