SE2531087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2317
  • Brachypodium distachyon
  • SE2531087
  • hAT
  • Hat9
  • Bd2:55693239-55693539
  • GTTGTGGG
  • GGGTATACCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGT  G            -   GTGGCCTGGCCCGAAGCCCGATGTCCCAGGTCGGGCTTGGGCCTCAGTTTCCAGTCCCAAGCCCGGCCCTAAAACTCGAAATGACCAAAAACGGGTATTTTTTAGGAAAAATTGGTATAAAAATCAT
     GG TATACCTGGGCA TGG                                                                                                                               
     || |||||||||||| |||                                                                                                                                
     TT ATATGGACCCGT TGG                                                                                                                               
GGGTG  G            T   AGTCCGGTCCGGCCCAAACCCGGCCCGAAGTATTTTCGGGCTGCAAGTTTGGACTTCGGACTCGGGCCGGGCTTTGAGGTTTTTATACGGTAAGTTCATAATTTTATTAACAAAAATCTTATTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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