SE2531089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2319
  • Brachypodium distachyon
  • SE2531089
  • hAT
  • Hat9
  • Bd3:31265157-31265448
  • ACCACAAG
  • TATACCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCACAAG         G  AACCCT   ---          AA   TGACGGTCAAACCTGAGGCCCGAGCCCGGCCCGGCGCGGCCCGAAACCCCGAAAATAGACCATTTAAGCATTGAAATAATTATTTTTGAAATAAATAAATGATT
        TATACCTGG CA      TGG   TCGGGCTTCA  GCC                                                                                                        
        ||||||||| ||      |||   ||||||||||  |||                                                                                                        T
        ATATGGACC GT      ACC   CGGGCCGGGT  CGG                                                                                                        
GAACACCA         A  ------   CAC          --   CCGGGTTGCAGGGCCCGGCCTAAGCCCGGAGTGAAAGGTCAAGGTTGGGGCTTTTTTCTGGCTTTACTAATTTTTCCCATAAAAAAATCCTTTTTATCCATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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