SE2521123

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2353
  • Brachypodium distachyon
  • SE2521123
  • Mutator
  • M16
  • Bd2:41305142-41305558
  • AGTCAAATA
  • GGCGAAGTATCCGGTGAAAACCCTCATTCAGTGCAAACCGTGCAAACT

Secondary structure and sequence

TSD    TIR
5'



3'
AGTCAAATA                      --   ATT A        C   C     ATATAAAAA   -  TTT     T         A     --C        C           CT C      CTACAAACC   --A                ATAAAAAG A     G  AAATT       G      ACAAC        -----   AA
         GGCGAAGTATCCGGTGAAAACC  CTC   C GTGCAAAC GTG AAACT         CCA CG   AGAAG TTCAAAAAA TTCTA   AAAATTAC ATATGTTGGGA  G GATGTT         TGC   AAATTTTAAGTTCAAA        C TTTGG AG     AAAAAGA AAATTT     GAATAGTG     TCG  
         ||||||||||||||||||||||  |||   | |||||||| ||| |||||         ||| ||   ||||| ||||||||| |||||   |||||||| |||||||||||  | ||||||         |||   ||||||||||||||||        | ||||| ||     ||||||| ||||||     ||||||||     |||  C
         CCGCTTCATAGGCCACTTTTGG  GAG   G CACGTTTG CAC TTTGA         GGT GC   TTTTC AAGTTTTTT AAGAT   TTTTAGTG TATACAATCTT  C CTACAA         ACG   TTTAAAGTTTAGGTTT        G AAACC TC     TTTTTCT TTTAAG     CTTATCAC     AGT  
ATAAACTGA                      TG   -AT C        A   T     ---------   A  --T     C         -     TTT        -           TT A      --AATATAT   CAC                GAGTTAAA C     A  GTCGC       G      ACGTA        CAAAA   CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End