SE2521137

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2367
  • Brachypodium distachyon
  • SE2521137
  • Mutator
  • M45
  • Bd3:47733658-47734102
  • TATTTTCAT
  • GAGAAAAGTATATTTTTCATCCCTCAACTTGTCAAAAAGTATGCAAATCATCTCTCAACTTTTTTCTTATACTTTTGGTCTCTCAATTGTTCAAACCGGACAACAATGGTCCGCCCTCCCATTCGAAGTGGTATTAGCGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTTCAT                  A              -               CA   C           -CT    C    G   T   -       C          A         GC C                 T   C   ---GAT  -  C GCATAAAAATACCACACTGGCTTAGCTTCTTTTCTTTTCTTTTGGGAAAACAAATTGATTT
         GAGAAAAGTATATTTTTC TCCCTCAACTTGTC AAAAAGTATGCAAAT  TCT TCAACTTTTTT   TATA TTTT GTC CTC AATTGTT AAACCGGACA CAATGGTCC  C TCCCATTCGAAGTGGTA TAG GTT      GT GT G                                                             
         |||||||||||||||||| |||||||||||||| |||||||||||||||  ||| |||||||||||   |||| |||| ||| ||| ||||||| |||||||||| |||||||||  | ||||||||||||||||| ||| |||      || || |                                                              
         CTCTTTTCATATAAAAAG AGGGAGTTGAACGG TTTTTCATGCGTTTA  AGG AGTTGAAGAAA   ATAT AAAA TAG GAG TTGACAA TTTGGTCTGT GTTACCAGG  G GGGGTAAGTTTCGCCGT ATC CAG      AG AC C                                                             
TACTTTTAT                  C              C               AC   A           ATC    A    G   -   A       T          A         GA C                 C   A   TAGTAT  T  - AAAACCGGTTCTTAAGAGTACAATCAGACATGTTAACCGTAGTGAAAAGCAGAATAGGAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End