SE0410001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2371
  • Brassica rapa
  • SE0410001
  • Tc1/Mariner
  • St1
  • A04:18537777-18538026
  • TA
  • TACTCCCTCTGTTCCTGAAAATAGGATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                    A          ---------    AGAAACACACATATTAAGAAAACTACTTTTTGTCTAGAAAATATCATTAAAACTATAAATTAATTGTACTCAACCAATTACAAAA
TACTCCCTCTGTTCCTGAAA TAGGATGTTT         AGGT                                                                                     
|||||||||||||||||||| ||||||||||         ||||                                                                                     T
ATGAGGGAGACAAGGATTTT ATCCTACAAA         AACT                                                                                     
                    C          ATATTTGAA    ACAAAGTTATATATTCTACAAAAGTAAAAGGTTACATTGAAAATGAAATAATTTTTTACACATAGGTTAGTATAAAATTATCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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