Plant MITE

SE0430002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2372
Brassica rapa
SE0430002
hAT
Hat1
A01:18846074-18846308
GTTATACC
TATACCCAGTGGCGGAGCTAAACCT

Secondary structure and sequence

TSD TIR

5'

3'

GT    C              AA    ----AAGTTCCAC      CA     --- A  TACTA   ATAAAAAGTACATCTATGAGAGTTGAACCCATTACATATGAGTCAAATCTAAGCATC
  TATA CCAGTGGCGGAGCT  ACCT             ATGGGT  TAATT   C AT     TAC                                                         
  |||| ||||||||||||||  ||||             ||||||  |||||   | ||     |||                                                          
  ATAT GGTCACCGCCTCGG  TGGA             CAGTTA  TGGGT   T TT     TGG                                                         
CC    T              --    ACCTCTCTTTCAC      AC     ACA -  -----   ATATTTATAATCAAAAATCCACATAACTGATACAACAAAGACACCATTTACTCAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430002

GTTATACCCAGTGGCGGAGCTAAACCTAAGTTCCACATGGGTCATAATTCAATTACTATACATAAAAAGTACATCTATGAGAGTTGAACCCATTACATATGAGTCAAATCTAAGCATCTTAACTCATTTACCACAGAAACAACATAGTCAATACACCTAAAAACTAATATTTATAGGTTTTACATGGGTCAATTGACCACTTTCTCTCCAAGGTGGCTCCGCCACTGGTTATACC

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