SE0410003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2373
  • Brassica rapa
  • SE0410003
  • Tc1/Mariner
  • St2
  • A09:25215214-25215485
  • TA
  • TACTCCCTCTGTTCCTAAAAGATCCATGTTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
             CC                    ATTTTCACACT     ATAAAACATATTAAAATTTAGCTATAAATGCATATTTTTTTGTAATTTTATATTTCCTATGTTTTTAAACCAATAAGATTTTAAGAA
TACTCCCTCTGTT  TAAAAGATCCATGTTTTAGA           TTTTA                                                                                       
|||||||||||||  ||||||||||||||||||||           |||||                                                                                       A
ATGAGGGAGACAA  ATTTTCTAGGTATAAGATCT           AAAAC                                                                                       
             AA                    -----CTTTTT     AAAGTTTTTCTACATATAAAATATAAAAGTTACGTTAAAAAAAGTTAATTATTACTCTTTAACACTTTAAGTTCTTGTAATTAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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