SE0410005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2375
  • Brassica rapa
  • SE0410005
  • Tc1/Mariner
  • St2
  • A10:12557965-12558215
  • TA
  • TACTCCCTCTGTTCCTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                   -A    ---     TTTAGAGTTTTCACACATATTAAGAAAACGCATTAAATAGCTATAATAAATTTATCGTTTTCTGTAATTTTCAATTTTCAACAACTTTTAACCA
TACTCCCTCTGTTCCTAAA  GATA   GATTT                                                                                              
|||||||||||||||||||  ||||   |||||                                                                                              A
ATGAGGGAGACAAGGATTT  TAGA   AAAAC                                                                                              
                   AC    TAC     CTTTTTTATAAACAAAGTTTTTCTACATATAAGATACAAAAGATACTTTTTTAACGTTTGAAATTCTTTTAATTAACCAAAATAATCTAATGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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