SE0430006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2376
  • Brassica rapa
  • SE0430006
  • hAT
  • Hat3
  • A10:14612671-14612870
  • TATATATA
  • TATATATACAGTGCCGGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                    -AAAACTATA   GA CCTTGGACAAATTTTGTTTATGTATTACAATTACTTAAGCATAATATTTTAGACCTAAACAAACA
TATATATACAGTGCCGGCTT          TTG  C                                                                 
||||||||||||||||||||          |||  |                                                                 T
ATATATATGTCACGGCCGAG          GTT  T                                                                 
                    ATCCCCCACC   -- GTACCGTATACGGTACCCAGGTAGAATTTTAATTGATTTAAATCACTATTTTTCCCAGGTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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