Plant MITE

SE0450008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2378
Brassica rapa
SE0450008
PIF/harbinger
To2
A03:10324867-10325125
TAA
AGAGCATCTCCAACCCCACTCTATTTTTCACTCTAAAATAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TA   G         --C CC           C               TTA    AAAGAA   TCCAATGGTACTCTATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAGTAATTTG
  AGA CATCTCCAA   C  ACTCTATTTTT ACTCTAAAATAGAGT   GAGT      TGC                                                                       
  ||| |||||||||   |  ||||||||||| |||||||||||||||   ||||      |||                                                                        
  TCT GTAGAGGTT   G  TGAGATAAAAA TGAGATTTTATCTCA   TTGA      GAT                                                                       
AA   G         ACC AA           A               ---    ------   ATTATCTCAAACTCAAACGAGGTTACCATGAGATAAAATCTCATCTTTTATCTCACTACTTGTTTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450008

TAAGAGCATCTCCAACCCCACTCTATTTTTCACTCTAAAATAGAGTTTAGAGTAAAGAATGCTCCAATGGTACTCTATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAGTAATTTGTTTTTTTTTGTTCATCACTCTATTTTCTACTCTAAAATAGAGTACCATTGGAGCAAACTCAAACTCTATTATAGAGTTACTCTATTTTAGAGTAAAAAATAGAGTAAGCCATTGGAGATGGTCTAA

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